Publications 2008
1. Abraham, M.J. and Gready, J.E., 2008, Ensuring mixing efficiency of replica-exchange
molecular dynamics simulations. Journal of Chemical Theory and Computation
4(7), 1119-1128.
2. Ada, G., 2008, The enunciation and impact of Macfarlane Burnet's clonal selection
theory of acquired immunity. Immunology and Cell Biology 86(2),
116-118 editorial material.
3. Adams, D.H., Strudwick, X.L., Kopecki, Z., Hooper-Jones, J.A., Matthaei,
K.I., Campbell, H.D., Powell, B.C., and Cowin, A.J., 2008, Gender specific effects
on the actin remodelling protein Flightless I and TGF-Beta1 contribute to impaired
wound healing in aged skin. International Journal of Biochemistry and Cell
Biology 40, 1555-1569.
4. Alsharifi, M., Lobigs, M., Bettadapura, J., Koskinen, A., and Mullbacher,
A., 2008, Restricted Semliki Forest virus replication in communication perforin
and fas-ligand double-deficient mice. Journal of General Virology 89,
1942-1944 Part 8.
5. Alsharifi, M., Mullbacher, A., and Regner, M., 2008, Interferon type I responses
in primary and secondary infections. Immunology and Cell Biology 86(3),
239-245 Review.
6. Asquith, K.L., Ramshaw, H.S., Hansbro, P.M., Beagley, K.W., Lopez, A.F.,
and Foster, P.S., 2008, The IL-3/IL-5/GM-CSF common beta receptor plays a pivotal
role in the regulation of Th2 immunity and allergic airway inflammation. Journal
of Immunology 180(2), 1199-1206.
7. Barritt, G.J., Chen, J.L., and Rychkov, G.Y., 2008, Ca2+-permeable channels
in the hepatocyte plasma membrane and their roles in hepatocyte physiology.
Biochimica et Biophysica Acta-molecular Cell Research 1783(5),
651-672.
8. Board, P.G., Coggan, M., Cappello, J., Zhou, H., Oakley, A.J., and Anders,
M.W., 2008, S-(4-Nitrophenacyl)glutathione is a specific substrate for glutathione
transferase omega 1-1. Analytical Biochemistry 374(1), 25-30.
9. Brettingham-Moore, K.H., Sprod, O.R., Chen, X., Oakford, P., Shannon, M.F.,
and Holloway, A.F., 2008, Determinants of a transcriptionally competent environment
at the GM-CSF promoter. Nucleic Acids Research 36(8), 2639-2653.
10. Burden, C.J., 2008, Understanding the physics of oligonucleotide microarrays:
the Affymetrix spike-in data reanalysed. Physical Biology 5(1),
16004.
11. Burden, C.J., Kantorovitz, M.R., and Wilson, S.R., 2008, Approximate word
matches between two random sequences. Annals of Applied Probability 18(1),
1-21.
12. Cherbuin, N., Anstey, K.J., Sachdev, P.S., Maller, J.J., Meslin, C., Mack,
H.A., Wen, W., and Easteal, S., 2008, Total and Regional Gray Matter Volume
Is Not Related to APOE*E4 Status in a Community Sample of Middle-Aged Individuals.
Journals of Gerontology Series A-Biological Sciences and Medical Sciences
63(5), 501-504.
13. Day, S.L., Ramshaw, I.A., Ramsay, A.J., and Ranasinghe, C., 2008, Differential
effects of the type I interferons alpha4, beta, and epsilon on antiviral activity
and vaccine efficacy. Journal of Immunology 180(11), 7158-7166.
14. Denborough, M.A., 2008, Malignant hyperthermia. Anesthesiology 108(1),
156-157.
15. Ellis, L., Pan, Y., Smyth, G.K., George, D.J., McCormack, C., Williams-Truax,
R., Mita, M., Beck, J., Burris, H., Ryan, G., Atadja, P., Butterfoss, D., Dugan,
M., Culver, K., Johnstone, R.W., and Prince, H.M., 2008, Histone deacetylase
inhibitor panobinostat induces clinical responses with associated alterations
in gene expression profiles in cutaneous T-cell lymphoma. Clinical Cancer
Research 14(14), 4500-4510.
16. Feng, W., Tu, J., Pouliquin, P., Cabrales, E., Shen, X., Dulhunty, A., Worley,
P.F., Allen, P.D., and Pessah, I.N., 2008, Dynamic regulation of ryanodine receptor
type 1 (RyR1) channel activity by Homer 1. Cell Calcium 43(3),
307-314.
17. Fenner, F., 2008, The Australian Academy of Science: The first 50 years.
Notes and Records of the Royal Society 62(3), 321-330.
18. Forbes, E.E., Groschwitz, K., Abonia, J.P., Brandt, E.B., Cohen, E., Blanchard,
C., Ahrens, R., Seidu, L., McKenzie, A., Strait, R., Finkelman, F.D., Foster,
P.S., Matthaei, K.I., Rothenberg, M.E., and Hogan, S.P., 2008, IL-9-and mast
cell-mediated intestinal permeability predisposes to oral antigen hypersensitivity.
Journal of Experimental Medicine 205(4), 897-913.
19. Franklin, A. and Blanden, R.V., 2008, The strand bias paradox of somatic
hypermutation at immunoglobulin loci. Trends in Immunology 29(4),
167-172.
20. Gosling, K.M., Goodnow, C.C., Verma, N.K., and Fahrer, A.M., 2008, Defective
T-cell function leading to reduced antibody production in a kleisin-beta mutant
mouse. Immunology 125(2), 208-217.
21. Heazlewood, C.K., Cook, M.C., Eri, R., Price, G.R., Tauro, S.B., Taupin,
D., Thornton, D.J., Png, C.W., Crockford, T.L., Cornall, R.J., Adams, R., Kato,
M., Nelms, K.A., Hong, N.A., Florin, T.H.J., Goodnow, C.C., and McGuckin, M.A.,
2008, Aberrant mucin assembly in mice causes endoplasmic reticulum stress and
spontaneous inflammation resembling ulcerative colitis. PLOS Medicine
5(3), 440-460.
22. Herbert, C., Hettiaratchi, A., Webb, D.C., Thomas, P.S., Foster, P.S., and
Kumar, R.K., 2008, Suppression of cytokine expression by roflumilast and dexamethasone
in a model of chronic asthma. Clinical and experimental Allergy 38(5),
847-856.
23. Hill, C.E., 2008, Inward rectification and vascular function: As it was
in the beginning. Journal of Physiology-London 586(6), 1465-1467.
24. Hu, J., Vidovic, M., Chen, M.-M., Lu, Q.-Y., and Song, Z.M., 2008, Activation
of ±2A adrenoceptors alters dendritic spine development and the expression
of spinophilin in cultured cortical neurons. Brain Research 1199,
37-45.
25. Irving-Rodgers, H.F., Ziolkowski, A.F., Parish, C.R., Sado, Y., Ninomiya,
Y., Simeonovic, C.J., and Rodgers, R.J., 2008, Molecular composition of the
peri-islet basement membrane in NOD mice: a barrier against destructive insulitis.
Diabetologia 51(9), 1680-1688.
26. Jalilian, C., Gallant, E.M., Board, P.G., and Dulhunty, A.F., 2008, Redox
potential and the response of cardiac ryanodine receptors to CLIC-2, a member
of the glutathione S-transferase structural family. Antioxidants and Redox
Signalling 10(10), 1675-1685.
27. Kaasinen, S.K., Harvey, L., Reynolds, A.J., and Hendry, I.A., 2008, Autophagy
generates retrogradely transported organelles: a hypothesis. International
Journal of Developmental Neuroscience 26(6), 625-634.
28. Kaiko, G.E., Phipps, S., Hickey, D.K., Lam, C.E., Hansbro, P.M., Foster,
P.S., and Beagley, K.W., 2008, Chlamydia muridarum infection subverts dendritic
cell function to promote Th2 immunity and airways hyperreactivity. Journal
of Immunology 180(4), 2225-2232.
29. Keys, J.R., Tallack, M.R., Zhan, Y., Papathanasiou, P., Goodnow, C.C., Gaensler,
K.M., Crossley, M., Dekker, J., and Perkins, A.C., 2008, A mechanism for Ikaros
regulation of human globin gene switching. British Journal of Haematology
141(3), 398-406.
30. Kimple, M.E., Joseph, J.W., Bailey, C.L., Fueger, P.T., Hendry, I.A., Newgard,
C.B., and Casey, P.J., 2008, G alpha(z) negatively regulates insulin secretion
and glucose clearance. Journal of Biological Chemistry 283(8),
4560-4567.
31. Kole, M.H.P., Ilschner, S.U., Kampa, B.M., Williams, S.R., Ruben, P.C.,
and Stuart, G.J., 2008, Action potential generation requires a high sodium channel
density in the axon initial segment. Nature Neuroscience 11(2),
178-186.
32. Krug, S., Zhang, Y., Mori, T.A., Croft, K.D., Vickers, J.J., Langton, L.K.,
and Whitworth, J.A., 2008, N-acetylcysteine prevents but does not reverse dexamethasone-induced
hypertension. Clinical and Experimental Pharmacology and Physiology 35(8),
979-981.
33. Leao, R.N., Leao, R.M., da Costa, L.F., Levinson, S.R., and Walmsley, B.,
2008, A novel role for MNTB neuron dendrites in regulating action potential
amplitude and cell excitability during repetitive firing. European Journal
of Neuroscience 27(12), 3095-3108.
34. Lee, E. and Lobigs, M., 2008, E protein domain III determinants of yellow
fever virus 17D vaccine strain enhance binding to glycosaminoglycans, impede
virus spread, and attenuate virulence. Journal of Virology 82(12),
6024-6033.
35. Letzkus, J.J. and Stuart, G.J., 2008, All asleep - But inhibition is wide
awake. Neuron 57(6), 804-806 Editorial Material.
36. Liston, A., Enders, A., and Siggs, O.M., 2008, Unravelling the association
of partial T-cell immunodeficiency and immune dysregulation. Nature Reviews
Immunology 8(7), 545-558 Review.
37. Liston, A., Nutsch, K.M., Farr, A.G., Lund, J.M., Rasmussen, J.P., Koni,
P.A., and Rudensky, A.Y., 2008, Differentiation of regulatory Foxp3+ T cells
in the thymic cortex. Proceedings of the National Academy of Sciences of
the United States of America 105(33), 11903-11908 Impact factor
9.598.
38. Liu, M., Duke, J.L., Richter, D.J., Vinuesa, C.G., Goodnow, C.C., Kleinstein,
S.H., and Schatz, D.G., 2008, Two levels of protection for the B cell genome
during somatic hypermutation. Nature 451(7180), 841-U11.
39. Ma, C.S., Chew, G.Y.J., Simpson, N., Priyadarshi, A., Wong, M., Grimbacher,
B., Fulcher, D.A., Tangye, S.G., and Cook, M.C., 2008, Deficiency of Th17 cells
in hyper IgE syndrome due to mutations in STAT3. Journal of Experimental
Medicine 205(7), 1551-1557.
40. Mattes, J., Collison, A., and Foster, P.S., 2008, Emerging role of microRNAs
in disease pathogenesis and strategies for therapeutic modulation. Current
Opinion in Molecular Therapeutics 10(2), 150-157 Review.
41. Murphy, J.M., Soboleva, T.A., Mirza, S., Ford, S.C., Olsen, J.E., Chen,
J.L., and Young, I.G., 2008, Clarification of the role of N-glycans on the common
beta-subunit of the human IL-3, IL-5 and GM-CSF receptors and the murine IL-3
beta-receptor in ligand-binding and receptor activation. Cytokine 42(2),
234-242.
42. Navarro-Gonzalez, M.F., Grayson, T.H., Meaney, K.R., Cribbs, L.L., and Hill,
C.E., 2008, Non-L-type voltage-dependant calcium channels control vascular tone
of the rat basilar artery. Clinical and Experimental Pharmacology and Physiology
eFirst.
43. Oakley, A.J., Yamada, T., Liu, D., Coggan, M., Clark, A.G., and Board, P.G.,
2008, The identification and structural characterization of C7orf24 as gamma-glutamyl
cyclotransferase - An essential enzyme in the gamma-glutamyl cycle. Journal
of Biological Chemistry 283(32), 22031-22042.
44. Ong, S.L.H., Zhang, Y., and Whitworth, J., 2008, Reactive Oxygen Species
and Glucocorticoid-Induced Hypertension. Clinical and Experimental Pharmacology
and Physiology 35, 477-482.
45. Paiva, L., Marcos, R., Creus, A., Coggan, M., Oakley, A.J., and Board, P.G.,
2008, Polymorphism of glutathione transferase Omega 1 in a population exposed
to a high environmental arsenic burden. Pharmacogenetics and genomics
18(1), 1-10.
46. Panchanathan, V., Chaudhri, G., and Karupiah, G., 2008, Correlates of protective
immunity in poxvirus infection: where does antibody stand? Immunology and
Cell Biology 86(1), 80-86.
47. Pardo, J., Wallich, R., Martin, P., Urban, C., Rongvaux, A., Flavell, R.A.,
Mullbacher, A., Borner, C., and Simon, M.M., 2008, Granzyme B-induced cell death
exerted by ex vivo CTL: discriminating requirements for cell death and some
of its signs. Cell Death and Differentiation 15(3), 567-569.
48. Prichard, Z., Mackinnon, A., Jorm, A.F., and Easteal, S., 2008, No evidence
for interaction between MAOA and childhood adversity for antisocial behavior.
American Journal of Medical Genetics Part B-Neuropsychiatric Genetics
147B(2), 228-232.
49. Quah, B.J.C., Barlow, V.P., McPhun, V., Matthaei, K.I., Hulett, M.D., and
Parish, C.R., 2008, Bystander B cells rapidly acquire antigen receptors from
activated B cells by membrane transfer. Proceedings of the National Academy
of Sciences of the United States of America 105(11), 4259-4264.
50. Quah, B.J.C., Warren, H.S., and Parish, C.R., 2008, Monitoring lymphocyte
proliferation in vitro and in vivo with the intracellular fluorescent dye carboxyfluorescein
diacetate succinimidyl ester. Nature Protocols 2(9), 2049-2056.
51. Rangasamy, D., Tremethick, D.J., and Greaves, I.K., 2008, Gene knockdown
by ecdysone-based inducible RNAi in stable mammalian cell lines. Nature Protocols
3(1), 79-88.
52. Raymond, C.R., 2008, Different requirements for action potentials in the
induction of different forms of long-term potentiation. Journal of Physiology-London
586(7), 1859-1865.
53. Scott, B. and Easteal, S., 2008, A single-step assay for the Gerbich-negative
allele of glycophorin C. Blood Cells, Molecules and Diseases 41(1),
1-4.
54. Staykova, M.A., Linares, D., Fordham, S.A., Paridaen, J.T., and Willenborg,
D.O., 2008, The innate immune response to adjuvants dictates the adaptive immune
response to autoantigens. Journal of Neuropathology and Experimental Neurology
67(6), 543-554.
55. Su, X.C., McAndrew, K., Huber, T., and Otting, G., 2008, Lanthanide-binding
peptides for NMR measurements of residual dipolar couplings and paramagnetic
effects from multiple angles. Journal of the American Chemical Society
130(5), 1681-1687.
56. Suzuki, K., Juelich, T., Lim, H., Ishida, T., Watanebe, T., Cooper, D.A.,
Rao, S., and Kelleher, A.D., 2008, Closed chromatin architecture is induced
by an RNA duplex targeting the HIV-1 promoter region. Journal of Biological
Chemistry 283(34), 23353-23363.
57. Sydnes, M.O., Bezos, A., Burns, C., Kruszelnicki, I., Parish, C.R., Su,
S., Rae, A.D., Willis, A.C., and Banwell, M.G., 2008, Synthesis and biological
evaluation of some enantiomerically pure C8c-C15 monoseco analogues of the phenanthroquinolizidine-type
alkaloids cryptopleurine and julandine. Australian Journal of Chemistry
61(7), 506-520.
58. Takenaka, T., Inoue, T., Kanno, Y., Okada, H., Hill, C.E., and Suzuki, H.,
2008, Connexins 37 and 40 transduce purinergic signals mediating renal autoregulation.
American Journal of Physiology-regulatory Integrative and Comparative Physiology
294, R1-R11.
59. Takenaka, T., Inoue, T., Kanno, Y., Okada, H., Meaney, K.R., Hill, C.E.,
and Suzuki, H., 2008, Expression and role of connexins in the rat renal vasculature.
Kidney International 73(4), 415-422.
60. Tierney, M.L., Luu, T., and Gage, P.W., 2008, Functional asymmetry of the
conserved cystine loops in alpha beta gamma GABA(A) receptors revealed by the
response to GABA activation and drug potentiation. International Journal
of Biochemistry and Cell Biology 40(5), 968-979.
61. Wagstaff, K.M., Fan, J.Y., De Jesus, M.A., Tremethick, D.J., and Jans, D.A.,
2008, Efficient gene delivery using reconstituted chromatin enhanced for nuclear
targeting. FASEB Journal 22(7), 2232-2242.
62. Warren, W.C., Hillier, L.W., Graves, J.A.M., Birney, E., Ponting, C.P.,
Grutzner, F., Belov, K., Miller, W., Clarke, L., Chinwalla, A.T., Yang, S.P.,
Heger, A., Locke, D.P., Miethke, P., Waters, P.D., Veyrunes, F., Fulton, L.,
Fulton, B., Graves, T., Wallis, J., Puente, X.S., Lopez-Otin, C., Ordonez, G.R.,
Eichler, E.E., Chen, L., Cheng, Z., Deakin, J.E., Alsop, A., Thompson, K., Kirby,
P., Papenfuss, A.T., Wakefield, M.J., Olender, T., Lancet, D., Huttley, G.A.,
Smit, A.F.A., Pask, A., Temple-Smith, P., Batzer, M.A., Walker, J.A., Konkel,
M.K., Harris, R.S., Whittington, C.M., Wong, E.S.W., Gemmell, N.J., Buschiazzo,
E., Jentzsch, I.M.V., Merkel, A., Schmitz, J., Zemann, A., Churakov, G., Kriegs,
J.O., Brosius, J., Murchison, E.P., Sachidanandam, R., Smith, C., Hannon, G.J.,
Tsend-Ayush, E., McMillan, D., Attenborough, R., Rens, W., Ferguson-Smith, M.,
Lefevre, C.M., Sharp, J.A., Nicholas, K.R., Ray, D.A., Kube, M., Reinhardt,
R., Pringle, T.H., Taylor, J., Jones, R.C., Nixon, B., Dacheux, J.L., Niwa,
H., Sekita, Y., Huang, X.Q., Stark, A., Kheradpour, P., Kellis, M., Flicek,
P., Chen, Y., Webber, C., Hardison, R., Nelson, J., Hallsworth-Pepin, K., Delehaunty,
K., Markovic, C., Minx, P., Feng, Y.C., Kremitzki, C., Mitreva, M., Glasscock,
J., Wylie, T., Wohldmann, P., Thiru, P., Nhan, M.N., Pohl, C.S., Smith, S.M.,
Hou, S.F., Renfree, M.B., Mardis, E.R. and Wilson, R.K., 2008, Genome analysis
of the platypus reveals unique signatures of evolution. Nature 453(7192),
175-U1.
63. Wei, L., Abdellatif, Y.A., Liu, D., Kimura, T., Coggan, M., Gallant, E.M.,
Beard, N.A., Board, P.G., and Dulhunty, A.E., 2008, Muscle-specific GSTM2-2
on the luminal side of the sarcoplasmic reticulum modifies RyR ion channel activity.
International Journal of Biochemistry and Cell Biology 40(8),
1616-1628.
64. Wilson, J.M., Cowan, A.I., and Brownstone, R.M., 2008, Hb9 interneurons:
Reply to Ziskind-Conhaim and Hinckley. Journal of Neurophysiology 99(2),
1047-1049 Letter.
65. Wood, R.J. and Hulett, M.D., 2008, Cell surface-expressed cation-independent
mannose 6-phosphate receptor (CD222) binds enzymatically active heparanase independently
of mannose 6-phosphate to promote extracellular matrix degradation. Journal
of Biological Chemistry 283(7), 4165-4176.
66. Youssoufian, M., Couchman, K., Shivdasani, M.N., Paolini, A.G., and Walmsley,
B., 2008, Maturation of auditory brainstem projections and calyces in the congenitally
deaf (dn/dn) mouse. Journal of Comparative Neurology 506(3), 442-451.
67. Yu, D., Cook, M.C., Shin, D.M., Silva, D.G., Marshall, J., Toellner, K.M.,
Havran, W.L., Caroni, P., Cooke, M.P., Morse, H.C., MacLennan, I.C.M., Goodnow,
C.C., and Vinuesa, C.G., 2008, Axon growth and guidance genes identify T-dependent
germinal centre B cells. Immunology and Cell Biology 86(1), 3-14.
68. Zhang, Y., Hu, L., Mori, T.A., Barden A., Croft, K.D., and Whitworth, J.A.,
2008, Arachidonic acid metabolism in glucocorticoid-induced hypertension. Clinical
and Experimental Pharmacology and Physiology 35(5-6), 557-562.
69. Zheng, K.Y., Board, P.G., Fei, X.F., Sun, Y., Lv, S., Yan, G.L., Liu, J.Q.,
Shen, J.C., and Luo, G.M., 2008, A novel selenium-containing glutathione transferase
zeta1-1, the activity of which surpasses the level of some native glutathione
peroxidases. International Journal of Biochemistry and Cell Biology 40(10),
2090-2097.
